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Assembly of a core peptidoglycan biosynthesis complex from Pseudomonas aeruginosa
The cell wall is important for bacterial survival and shape, and its biosynthetic mechanism is the target of antibiotics such as beta-lactams and vancomycin. The spread of resistant strains, however, has thwarted the usefulness of these drugs and calls for efforts towards the understanding of proces
Towards Alzheimer's root cause: the role of Mitochondrial Complex I Assembly Factors
Mitochondria coordinate central functions in the cell and have a crucial role in energy metabolism. Fatty acid ?-oxidation (FAO) and oxidative phosphorylation (OXPHOS) are redox processes driven by mitochondrial protein complexes to generate ATP. How these pathways are coordinated remains unknown. A
Force nanosensor to measure membrane protein oligomerization
Scientific background. The oligomerization of membrane proteins is required for signaling and trafficking functions in normal or diseased tissues. From a fundamental perspective, extensive theoretical work has been devoted to determine the physical mechanisms that drive this process, in particular m
A multiscale study of stress-induced changes in nucleoid architecture and plasticity
An organism’s capacity to survive depends, at least in part, on its ability to sense and respond to sudden changes in its environment. This is particularly true for bacteria, that have devised a wide range of strategies to respond to stress, including the capacity to rapidly remodel and compact thei
Deciphering the molecular mechanism at the base of Type IVa pili activation
In all living organisms, surface cell movements are essential for environmental exploration and multicellular development, and are also at the origin of cancer cell dissemination. In Bacteria, surface cell movements are mediated by a class of widespread nanomachines called Type-IV Pili (Tfp). Import
Deciphering unconventional endocytic mechanisms in health and disease
Endocytosis is the general mechanism by which cells internalize micronutrients and cell surface receptors. Importantly, viruses, toxins, and bacteria often hijack the endocytic machinery to access the host cell. Increasing evidence points out that unconventional endocytic mechanisms exist parallel
Interaction of E3 Ub-ligase HERC2 with DOCKD RhoGEFs: structure-interactome-function studies and involvement in synaptogenesis and neurodevelopmental syndromes.
Synaptic dendritic spine formation is often defective in autism spectrum disorders (ASD) and intellectual disability (ID). Several Rho GTPases, and their RhoGEF activators, control synaptogenesis by regulating actin cytoskeleton dynamics. We established a novel functional link between the DOCKD fami
Mirror Mirror on the Wall: Fine catalytic investigation into the hydrolysis of biotechnologically interesting red algal cell wall enantiomeric glycans
Red algae have sulfated galactans (carrageenans or agars) in their cell walls. The bicyclic 3,6-anhydro-D-galactose is found in carrageenans, its enantiomer, 3,6-anhydro-L-galactose, is found in agars. The 3,6-anhydro-bridge introduces strict structural constraints and thus the alpha-linkage is main
Role of mitochondria-associated endoplasmic reticulum membranes in lipid droplet formation
Non-vesicular lipid transport mediated by lipid transfer proteins (LTPs) at membrane contact sites (MCS) is emerging as a key mechanism to preserve the membrane identity of cellular organelles, especially in the case of mitochondria (Mito) and Lipid droplets (LDs) that are not integrated into the cl
Investigation of the structure, biological roles and mechanisms of action of CHIKV macro-complexes made of non-structural proteins
Chikungunya virus (CHIKV) is a mosquito-borne alphavirus that has re-emerged in many parts of Africa, Asia and America causing large-scale epidemics in the last decades. CHIKV is increasingly recognized as an important public health problem, due to rapid spread of infection that characterizes epidem
Innovative NMR approaches for the study of large nucleic acid-protein complexes
Interactions of proteins with nucleic acids are central in a large variety of biomolecular processes. When the nucleic acids and proteins form together large polymers, the underlying structural events remain poorly characterized, because of the complex choreography of combined polymerization and nuc
Assembly and Function of the Type IV Secretion System Channel from Integrative and Conjugative Elements
The emergence and the spread of antibiotic resistance are natural phenomena of bacterial adaptation to antimicrobial exposure. The last decades, the inappropriate use of antibiotics in human and veterinary medicine has accelerated these processes, leading to the emergence of pathogenic bacteria that
Development of the first infrared fluorescent protein with emission above 800 nm
Fluorescence cell imaging benefited from the Green Fluorescent Protein revolution in the early 1990’s, which saw the development of genetically-encoded fluorophores covering the whole visible spectrum. 15 years later, another family of fluorescent proteins (FPs) were developed from the chromophore-b
Ceramidases as new drug targets: ligand discovery and functional analyses guided by molecular modeling
The biggest challenge in the pharmaceutical industry R&D is preclinical drug target validation. A poorly selected target?often due to poor probes used in target validation assays?is the main source of failure in drug development. This project aims to determine whether transmembrane ceramidases could
Structure-function analysis of the role of rRNA modifications during translation initiation on the human ribosome
Cellular mRNAs bind to the ribosome during translation initiation and are involved in the regulation of protein synthesis in different manners. While translation initiation in eukaryotes mainly takes place through a cap-dependent process, 10% of human mRNAs, coding for key regulators of cell physiol
Development of Serial electron and X-ray nano-crystallography by use of in vivo grown nanocrystals.
Serial electron diffraction (SED) and serial synchrotron nano-crystallography (nano-SSX) are just-emerging methods in structural biology, whereby data are collected from protein nanocrystals using a sub-micron-sized electron or X-ray beam, respectively. These methods are set to lead the future of na
Characterization of macromolecular complexes mediating glucocorticoid effects in skeletal muscles
Glucocorticoids (GC) are widely prescribed drugs for chronic inflammatory conditions, including rheumatoid arthritis, multiple sclerosis and asthma that have revolutionized the field of medicine. However, long-term treatments have important side effects as they induce diabetes, osteoporosis and musc
Mechanisms of ribosome inhibition by context-dependent antibiotics
The bacterial ribosome is a major antibiotic target. Although drugs that target the ribosome have largely been regarded as general inhibitors of translation that prevent the synthesis of all proteins with the same efficiency, a more nuanced view of antibiotic action has emerged in recent years. Inde
Uncovering the functioning of a multidrug efflux pump of Streptococcus pneumoniae involved in fluoroquinolone ResIStancE
Multidrug efflux pumps are major players in antibiotic resistance. Despite a better understanding of their global functioning mechanism, how they work in vivo (with respect to the bio-availability and partition of the drugs in the bacteria) and what is their intimate molecular mechanism (spectrum of
A good grasp on the synthesis and role of glutaminylation post-translational modification
Post-translational modifications provide proteins with an extended repertoire to modulate their stability and function. A new modification of the eEF1A translation elongation factor: glutaminylation of a single glutamate, was reported recently. The synthesis, function and distribution of this origin
Structural and functional study of the human ATAC co-activator complex
Transcription initiation is a major regulatory step in eukaryotic gene expression. The DNA in eukaryotic cells is organized into chromatin, a highly conserved polymer that controls many crucial functions of the genome. The accessibility of DNA to the transcription machinery is regulated by the degre
Structural studies of the entry-fusion complex of poxvirus
The entry of enveloped viruses is achieved by the fusion of viral and cellular membranes, a critical step in infection that provides targets for vaccines and therapeutics. Viral fusion is catalyzed by a specific protein termed fusion protein, which associate with other proteins on the viral surface
Structural basis of the Glycoprotein of Rabies virus and related Lyssaviruses
Lyssaviruses (LYSV) are enveloped viruses that belong to the Rhabdoviridae family. LYSV cause deadly encephalitis, and rabies virus (RABV), the most famous of this genus, is responsible for 59000 annual deaths. Lyssaviruses are divergent enough to escape the immune response induced by current anti-r
Mechanism of lysosomal signaling by an amino acid transceptor
In addition to their degradative role, lysosomes act as signaling hubs which sense and signal internal cues, such as intracellular amino acids, to coordinate cell responses. A well-characterized example is the activation of the mechanistic target of rapamycin complex 1 (mTORC1), a master growth regu
Cryo-electron microscopy structure of the poxvirus DNA replication machinery
We propose to elucidate structure and function of the poxvirus DNA replication machinery by single particle cryo-electron microscopy (cryo-EM). The poxvirus family comprises members with a strong potential of spillover from the animal kingdom, such as cowpox and monkeypox, which leads to local epide
Unravelling the mechanism of Fe-S cluster assembly and its regulation by frataxin
Iron-sulfur (Fe-S) centers are protein cofactors involved in a multitude of essential biological processes. They are synthesized by highly conserved multi-protein machineries via a still elusive multi-step process. Due to their critical roles, any defect in their biogenesis leads to severe diseases
Identification, Architecture, Evolution and Adaptation of a unique T6SS membrane complex in Bacteroidetes
The Bacteroidetes phylum is a dominant member of the Human gut microbiota, where it has a key role in regulating its composition and maintaining good health. Many of these bacteria harbor a type VI secretion system (T6SSiii) that delivers protein effectors to other bacteria. This allows commensals t
Spatio-temporal control of Rac1 by its atypical regulator Bcr at the membrane periphery
Cells established a spectacular protein network that enables them to receive and process signals. Among the essential proteins orchestrating signaling, the family of small GTPases plays a central role by functioning as molecular switches that alternate between an inactive form bound to GDP and an ac
Photoswitching mechanisms and environmental dependencies of fluorescent protein markers
Photo-switchable fluorescent protein markers provide crucial tools for a wide range of applications in advanced fluorescence microscopy such as super-resolution and multiplexed microscopies. A major challenge for the optimal use of these molecules in cellular applications is the dependency of their
Cellular control of microtubule structural instability
Microtubules (MTs) are cytoskeletal elements that are essential to a variety of functions, including cell motility, compartmentalization and division, that they ensure thanks to their dynamic instability. We recently developed a new method based on dual-axis cryo-electron tomography followed by segm
Microtubule methylation by SET domain protein methyltransferases
The alpha-beta-tubulin heterodimer protein is the microtubule building block. The hydrolysis of the GTP molecule bound to the beta subunit that accompanies assembly makes microtubules intrinsically dynamic. This dynamics is controlled in the cell by several families of regulatory proteins, most of t
Combining biophysical methods with innovative hybrid dynamics simulations to elucidate the mechanism of bacterial silver resistance
Silver antimicrobial properties have been used for thousands of years, from the Chaldeans as early as 4000 B.C.E. Despite this long-standing history and its demonstrated activity against Gram-negative bacteria, the complete bactericidal mode of action of silver remains unclear. To counteract the tox